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Excel template for metabolomics data

SysMO DB

Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat

Submitter: Olga Krebs

Assay type: Amplification

Technology type: Mass Spectrometry

Investigation: Methods for interrelating 'omics data

Study: Metabolomics data capture

Organisms: Callimico goeldii

SOPs: new sop

Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data

Snapshots: No snapshots

Created: 10th Jun 2009 at 17:22, Last updated: 23rd Jun 2021 at 12:40

Changes in flux on the transcriptome

SysMO DB

Assay to measure gene expression of yeast saccharomyces cerevisiae under different nutrient limitations

Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur

This data is public data taken from the BioInvestigation Index.

(http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)

Submitter: Katy Wolstencroft

Assay type: Transcriptional Profiling

Technology type: Microarray

Investigation: Growth control of the eukaryote cell: a systems...

Study: 1 hidden item

Organisms: Callimico goeldii

SOPs: COGEME_extraction_mod-chemostat_v1

Data files: a_transcriptome from BII-S-1

Snapshots: No snapshots

Created: 16th Oct 2009 at 13:23, Last updated: 26th Sep 2017 at 10:54

Changes in flux on the metabolome

SysMO DB

Assay to measure metabolites of yeast saccharomyces cerevisiae under different nutrient limitations

Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur

This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)

Submitter: Katy Wolstencroft

Assay type: Metabolite Profiling

Technology type: Mass Spectrometry

Investigation: Growth control of the eukaryote cell: a systems...

Study: 1 hidden item

Organisms: Callimico goeldii

SOPs: No SOPs

Data files: a_metabolome_BII-S-1

Snapshots: No snapshots

Created: 16th Oct 2009 at 13:56, Last updated: 26th Sep 2017 at 10:54

Changes in flux on the proteome

SysMO DB

Assay to measure protein expression in yeast saccharomyces cerevisiae under different nutrient limitations

Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur

This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)

Submitter: Katy Wolstencroft

Assay type: Protein Expression Profiling

Technology type: Mass Spectrometry

Investigation: Growth control of the eukaryote cell: a systems...

Study: 1 hidden item

Organisms: Callimico goeldii

SOPs: No SOPs

Data files: a_proteome from BII-S-1

Snapshots: No snapshots

Created: 16th Oct 2009 at 13:58, Last updated: 26th Sep 2017 at 10:54

Time course analysis of transcription

SysMO DB

Assay for transcriptional profiling time course in yeast treated with rapamycin

This is public data from the BioInvestigation Index (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-2)

Submitter: Katy Wolstencroft

Assay type: Transcriptional Profiling

Technology type: Microarray

Investigation: Growth control of the eukaryote cell: a systems...

Study: A time course analysis of transcription respon...

Organisms: Callimico goeldii

SOPs: 1 hidden item

Data files: a_microarray from BII-S-2

Snapshots: No snapshots

Created: 16th Oct 2009 at 14:54, Last updated: 26th Sep 2017 at 10:54

Transcriptional profiling

SysMO DB

Assay for transcriptional profiling time course in yeast

Submitter: Guest

Assay type: Transcriptomics

Technology type: Microarray

Investigation: Growth control of the eukaryote cell: a systems...

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: test pdf, test pdf, test pdf file

Snapshots: No snapshots

Created: 9th Jul 2010 at 07:57, Last updated: 26th Sep 2017 at 10:54

Extracellular Glycerol

SysMO DB

An assay to measure exttracellular glycerol using HPLC

Submitter: Katy Wolstencroft

Assay type: Metabolite Profiling

Technology type: HPLC

Investigation: Glycerol Synthesis in Saccharomyces cerevisiae

Study: Glycerol Synthesis Pathway

Organisms: Callimico goeldii

SOPs: No SOPs

Data files: random datafile and 1 hidden item

Snapshots: No snapshots

Created: 19th Aug 2011 at 10:02, Last updated: 26th Sep 2017 at 10:54

Intracellular Metabolites

SysMO DB

Intracellular metabolite concentrations were determined enzymatically by measuring the oxidation or reduction of NADH or NAD+, respectively, at 340 nm in a Beckman Coulter DU640 spectrophotometer

Submitter: Katy Wolstencroft

Assay type: Intracellular Metabolite Concentration

Technology type: Enzymatic Activity Measurements

Investigation: Glycerol Synthesis in Saccharomyces cerevisiae

Study: Glycerol Synthesis Pathway

Organisms: Callimico goeldii

SOPs: No SOPs

Data files: Cronwright Parameter Data

Snapshots: No snapshots

Created: 19th Aug 2011 at 11:28, Last updated: 26th Sep 2017 at 10:54

new assay from data file

SysMO DB

No description specified

Submitter: Lihua Angel